The Draft Genome Sequence of Plant Pathogenic Fungus, Fusarium oxysporum f. sp. lactucae 16-086
Journal of Korean Society of International Agriculture 37 (3): 226-231
Jongsun Park, Hong Xi, Mangi Kim, You-Kyoung Han, and Tae-Sung KimABSTRACT: Fusarium oxysporum f. sp. lactucae (FOL) threatens lettuce production w orldw ide, yet genomic resources for many field isolates remain scarce, hampering both molecular race diagnostics and
effector‑guided breeding. In this study, we produced the draft genome sequence of FOL isolate 16-086
collected from South Korea. High‑molecular‑weight DNA of the 16-086 extracted from a monoconidial
culture was sequenced on the Illumina HiSeq X Ten platform (2 × 151 bp). De‑novo assembly with
SOAPdenovo produced a 55.0 Mb genome distributed over 16,636 scaffolds (N₅₀ = 104 kb) with 1,941
bp of gaps and a GC content of 47.60 %. AUGUSTUS predicted 16,158 protein‑coding genes, 74.9 %
of w hich carry recognisable InterPro domains, comparable to other F. oxysporum genomes. Whole‑genome completeness reached 96.3 % BUSCOs for Ascomycota. Pathogenicity was validated with the susceptible line ‘knou322’. Single‑locus PCR alone cannot conclusively assign strain 16‑086 to race 3; additional multi-loci assays and pathogenicity tests are required to resolve its race identity. The genome assembly and raw reads have been deposited in GenBank under BioProject PRJNA758594, BioSample
SAMN21031248 and SRA SRR15671714, providing an open resource for refining molecular diagnostics
and accelerating resistance‑gene deployment in lettuce breeding programmes.